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Layered Pumpkin Cheesecake Recipe with a Gluten Free Crust

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This gorgeous Layered Pumpkin Cheesecake recipe is made with a nutty gluten free graham cracker crust but can be made with regular graham crackers. It’s easy to make with just a few simple steps that creates a pretty layered and slightly marbled effect. The smooth and creamy cheesecake filling is flavored with warm fall-inspired spices and makes the perfect holiday dessert!

overhead shot of a Layered Pumpkin Cheesecake made with a Gluten Free Crust and decorated with dollops of whipped cream served on a white marble platter on a rattan charger.
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This Layered Pumpkin Cheesecake recipe may look hard to make, but rest assured, it’s actually easy! With a few simple steps, you can create a visually stunning dessert that looks incredibly impressive when you serve it!

The pumpkin layer is flavored after half the cheesecake filling has been added to the crust. You don’t even have to dirty a second bowl! 

But don’t tell your family that this cheesecake was simple to make. Let them think you’re the next winner of The Great British Baking Show.

overhead shot of a baked and sliced Layered Pumpkin Cheesecake with a Gluten Free Crust with a whipped cream piped border

How to Get the Layered Cheesecake Look

Like I said, the layering is simple. You divide the batter into 2 portions and the plain cheesecake layer is poured into the crust. Then you mix the pumpkin and spices in the remaining batter and gently pour it over the plain layer.

Don’t worry if the white layer rises up during the baking session, the top will still remain all pumpkin and the plain cheesecake inside will be the surprise.

If you live more than 700 feet above sea level (like my photographer!) the plain layer may rise a little more and look a little more marbled on the inside. It will still taste just as good and give it a little extra flair.

a slice of marbled and Layered Pumpkin Cheesecake with a Gluten Free Crust on a small round white plate with a silver fork on the side

Gluten Free Cheesecake Crust

I usually use my gluten free graham cracker crust recipe as the base of my cheesecakes; which is made with gluten free graham crackers. However, since this is a holiday cheesecake, we’re kicking things up a bit.

I added toasted pecans, ground ginger, and cinnamon to the crust to give it some holiday pizzazz. It adds so much extra flavor to the crust and compliments the cheesecake filling.

Not only is this cheesecake visually layered, but it has layers of flavor. It’s truly the ultimate pumpkin cheesecake!

If you can’t have nuts, use the graham cracker crust I linked to above and add the spices called for in this recipe, and replace the granulated sugar with the brown sugar called for here.

close up shot of the side of a Layered Pumpkin Cheesecake to showcase the Gluten Free Crust made with toasted pecans, gluten free graham crackers, and spices

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Key Ingredients

  • Cream Cheese – This is not a sponsored post but I prefer Philadephia Cream Cheese when making cheesecake. Be sure to use block cream cheese and not whipped or from a tub.
  • Pumpkin Puree – use pumpkin puree and not pumpkin pie filling.
  • Pecans – the pecans add so much flavor to the crust! Be sure to start with raw pecans before toasting them, not salted or candied.
  • Spices – this cheesecake calls for ground ginger, cinnamon, and pumpkin pie spice. You can make a homemade pumpkin pie spice (the recipe is also in my cookbook, The Gluten-Free Quick Breads Cookbook) or use storebought. 
overhead shot of ingredients in individual bowls and measuring spoons to make Layered Pumpkin Cheesecake with a Gluten Free Crust

Equipment Needed to Make a Homemade Cheesecake

  • Food Processor – I use a 7-Cup Cuisinart Food Processor to make my graham cracker crumbs and pulverize the toasted pecans. It’s such a time saver and makes a better crumb than doing it by hand.
  • Stand Mixer or Hand Mixer – to make the creamiest, smoothest cheesecake filling, use a stand mixer or hand mixer to mix. 
  • Springform Pan – a Springform Pan (aka cheesecake pan) is a must for making cheesecakes. The unique pan will make it a breeze to remove the cheesecake from the pan for easier slicing and serving. This recipe has been developed to be baked in a standard 9-inch springform pan.
  • Aluminium Foil – wrap this around the bottom of the pan to help prevent any butter from escaping.
  • Rimmed Baking Sheet – a half sheet pan will save your oven if any of the butter leaks out of the bottom of the pan. It will prevent it from getting on the bottom of your oven and burning.
overhead shot of a black 9-inch springform that has been sprayed with nonstick spray

How to Make a Layered Pumpkin Cheesecake (Visual Instructions)

Step 1. Make the Gluten Free Cheesecake Crust

Step 2. Make the Cheesecake Filling

*Be sure to read the full recipe card below for exact measurements and step-by-step instructions.


Tips for Making a Double-Layer Pumpkin Cheesecake

  • Read through the recipe before starting. It sounds like a no-brainer but trust me, so many people skip this step and don’t read the recipe fully until they’re actually making it. Reading through the recipe first will help you follow the steps without getting stressed. Once you read through it, you’ll see that making this cheesecake isn’t difficult!
  • Soften the cream cheese long enough. You want the cream cheese to be room temperature and the chill completely gone. Cold cream cheese will not cream properly and you’ll end up with lumps.
  • Use block cream cheese. Don’t be tempted to use whipped or tub cream cheese, it’s too soft and your cheesecake won’t have the right texture and won’t set up correctly.
  • Give yourself time to make this cheesecake. Cheesecakes should be made a day ahead of serving. That way, it has plenty of time to cool slowly with enough time to be refrigerated.
a bite of Layered Pumpkin Cheesecake with a Gluten Free Crust on a silver fork

Serving Suggestions

Serve this layered pumpkin cheesecake with a dollop of homemade whipped cream, white chocolate ganache whipped cream, or a scoop of vanilla ice cream. This would even be delicious with a drizzle of salted caramel sauce!


Other Gluten Free Cheesecake Recipes To Try

a slice of Layered Pumpkin Cheesecake with a Gluten Free Crust on a small round white plate

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overhead shot of a Layered Pumpkin Cheesecake made with a Gluten Free Crust and decorated with dollops of whipped cream served on a white marble platter on a rattan charger.

Layered Pumpkin Cheesecake with a Gluten Free Crust

No ratings yet
This gorgeous Layered Pumpkin Cheesecake recipe is made with a nutty gluten free graham cracker crust but can be made with regular graham crackers. It’s easy to make with just a few simple steps that creates a pretty layered and slightly marbled effect. The smooth and creamy cheesecake filling is flavored with warm fall-inspired spices and makes the perfect holiday dessert!
Prep Time: 30 minutes
Cook Time: 1 hour 30 minutes
Additional Time: 8 hours
Total Time: 10 hours
Servings: 12
Print Rate Pin

Ingredients

For the Crust

  • 1 1/2 cups 165g gluten free graham cracker crumbs
  • 1/2 cup 65g pecans, toasted
  • 1/2 teaspoon ground ginger
  • 1/4 teaspoon ground cinnamon
  • 2 Tablespoons 30g light brown sugar
  • 4 Tablespoons unsalted butter melted
  • pinch of fine sea salt

For the Cheesecake

  • 4 8 oz. packages cream cheese room temperature (see notes)
  • 1 1/2 cups granulated sugar
  • 4 large eggs room temperature
  • 1 cup pumpkin puree
  • 1 1/2 teaspoons ground ginger
  • 1 1/4 teaspoons pumpkin pie spice
  • 1 1/2 teaspoons pure vanilla extract

Instructions

Make the Crust

  • Preheat oven to 300℉. Lightly spray a 9-inch springform pan with nonstick spray and wrap aluminum foil around the outside of the pan.
    overhead shot of a black 9-inch springform that has been sprayed with nonstick spray
  • Add the pecans to a cold skillet and heat over medium-low heat, about 5 minutes. When done, the pecans will be fragrant and have a toasted aroma. Be careful not to burn.
    overhead shot of raw pecans halves in a non-stick skillet
  • Once toasted, add the pecans to a food processor and pulse until the nuts are evenly ground into a fine almond-flour-like consistency.
    toasted pecans that have been processes with a food processor.
  • Add the ground pecans, graham cracker crumbs, light brown sugar, ginger, salt, and melted butter to a small bowl.
    ground pecans, ground graham crackers, and melted butter in a white bowl
  • Mix to combine making sure all the crumbs are moistened.
    ground pecans, ground graham crackers, and melted butter mixed together in a white bowl
  • Transfer the crust mixture to the prepared pan and press into the pan to form a firm, even layer on the bottom of the pan and about 1 inch up the sides.
    gluten free graham cracker crust with pecans poured into a black springform pan
  • Bake for 10 minutes to set. Then set aside to cool while making the filling.
    gluten free graham cracker crust with pecans pressed into the bottom and up the sides of a black springform pan

Make the Cheesecake

  • Add the cream cheese to the bowl of a stand mixer and beat on medium speed until smooth and creamy, about 2 minutes.
    cream cheese beaten in a silver stand mixer bowl
  • While the mixer is running at low speed, gradually pour in the sugar.
    cream cheese mixed with sugar in a silver stand mixer bowl
  • Once incorporated, beat in the eggs, one at a time.
    an egg added to cream cheese and sugar in a stand mixer bowl
  • Scrape down the bowl as needed and mix on low speed until fully combined.
    plain cheesecake batter in a silver stand mixer bowl
  • Transfer 3 cups of the cheesecake mixture to the baking pan and spread evenly over the crust.
    plain cheesecake batter with crust in a black springform pan
  • Add the pumpkin puree, ginger, and pumpkin pie spice to the remaining cheesecake batter in the mixing bowl.
    pumpkin puree and spices added to plain cheesecake batter
  • Beat on low speed until the pumpkin and spices are completely combined, making sure there are no white streaks left in the batter.
    pumpkin cheesecake batter in a silver stand mixer bowl
  • Carefully spoon the pumpkin cheesecake mixture over the plain cheesecake, making sure the layers stay separate.
    pumpkin cheesecake layer over a plain layer in a black springform pan
  • Place a rimmed baking sheet in the oven under the cheesecake to catch any butter that may leak from the pan. Bake for 1 hour and 30 minutes. The edges should be set and the center will still be slightly jiggly. Then turn off the oven and crack the door, leaving the cheesecake in the oven for 1 hour.
  • Then remove the cheesecake from the oven and let it cool at room temperature on a wire rack for an hour.
  • Loosely cover with aluminum foil and refrigerate for a minimum of 6 hours but overnight is best.
  • To serve, use a thin, offset spatula to loosen the cheesecake from the sides of the pan and gently remove the cheese from the pan.
  • Serve with homemade whipped cream and/or a dusting of cinnamon sugar.

Notes

  1. Don’t be intimidated by the number of steps. I’ve broken them down into very clear, concise instructions to make it easy for you to follow and successfully bake this cheesecake. You’ll see that it’s easier than it appears!
  2. Be careful not to over-process the nuts so they do not release their natural oil and start turning into pecan butter.
  3. Use block cream cheese. I prefer Philadelphia Cream Cheese.
  4. Use a spoon to scoop and transfer the pumpkin cheesecake layer from the bowl to the cheesecake pan. Pouring the cheesecake in the pan can push the white layer up the sides and create more of a marbled look than a layered look.

Nutrition Information

Calories: 271kcal | Carbohydrates: 40g | Protein: 8g | Fat: 10g | Saturated Fat: 4g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 4g | Trans Fat: 0.2g | Cholesterol: 68mg | Sodium: 292mg | Potassium: 188mg | Fiber: 1g | Sugar: 32g | Vitamin A: 3391IU | Vitamin C: 1mg | Calcium: 130mg | Iron: 1mg

Disclaimers

As an Amazon Associate and member of other affiliate programs, I earn from qualifying purchases.

Nutrition Facts are estimated and aren’t always accurate. Please consult a doctor or nutritionist if you have special dietary needs.

Did you make this?Mention @whattheforkfoodblog or leave a comment rating below!
overhead shot of a slice of Layered Pumpkin Cheesecake with a Gluten Free Crust on a small round white plate with a silver fork and two cinnamon sticks on the side

Leave a comment

If you made this recipe, please consider giving it a star rating when you post a comment. Star ratings help people discover my recipes online.

Sincerely,
Shay

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Recipe Rating




  1. Amy says:

    This recipe made a great looking and wonderful tasting dessert. Easy directions to follow with photos. This one is a keeper!

  2. Morlene says:

    Eager to make this recipe! It sounds yummy!
    Shay, please edit instructions to make clear the chopped/powdered pecans are added to the graham cracker mixture for the crust. The nuts are in the list of ingredients for the crust, and the roasting method is explained, then the nuts are never mentioned again.